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FASTQC: A fatal error has been detected by the Java Runtime

发布于:2018-07-06  |   作者:admin  |   已聚集:人围观
FASTQC安装错误提示:

# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x00007fe680eb9009, pid=23287, tid=23308
#
# JRE version: OpenJDK Runtime Environment (9.0) (build 9-internal+0-2016-04-14-195246.buildd.src)
# Java VM: OpenJDK 64-Bit Server VM (9-internal+0-2016-04-14-195246.buildd.src, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# C  [libjava.so+0x1d009]  JNU_GetEnv+0x19
#
# Core dump will be written. Default location: Core dumps may be processed with "/usr/share/apport/apport %p %s %c %d %P" (or dumping to /home/fdeng/projects/2018_6_27_pig_metagenomic/core.23287)
#
# If you would like to submit a bug report, please visit:
#   http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
原因: 要求java版本是1.8,但是我的电脑上安装了1.9版本的java

解决方法::
sudo add-apt-repository --yes ppa:webupd8team/java
sudo apt-get update
sudo apt-get install --yes oracle-java8-installer
$ java -version
java version "1.8.0_91"
Java(TM) SE Runtime Environment (build 1.8.0_91-b14)
Java HotSpot(TM) 64-Bit Server VM (build 25.91-b14, mixed mode)
标签:Java(2)FASTQC(1)
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